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accession-icon GSE37832
Expression data from mouse embryonic neural stem cells
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

Neural stem cells from different brain regions show differencies in gene expression patterns and physiological functions.

Publication Title

Innate neural stem cell heterogeneity determines the patterning of glioma formation in children.

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon GSE16674
Analysis of gene expression in miR-34a overexpressing K562 cells
  • organism-icon Homo sapiens
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

miR-34a is strongly induced upon TPA-induced megakaryocyte differentiation of K562 cells. To investigate the gene networks regulated by this miRNA during the process of differentiation we performed gene microarray analysis in K562 cells overexpressing miR-34a or a control sequence.

Publication Title

miR-34a contributes to megakaryocytic differentiation of K562 cells independently of p53.

Sample Metadata Fields

Cell line

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accession-icon GSE14519
Expression data from multiple myeloma cells treated with arsenic
  • organism-icon Homo sapiens
  • sample-icon 27 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

We used microarrays to examine changes in gene expression in multiple myeloma cell lines following treatment with arsenic trioxide and darinaparsin

Publication Title

Darinaparsin induces a unique cellular response and is active in an arsenic trioxide-resistant myeloma cell line.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE28998
Human skeletal muscle transcriptional response to exercise
  • organism-icon Homo sapiens
  • sample-icon 13 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

The aim of this investigation was to evaluate the effect of training on the global transcriptional response of skeletal muscle to an acute bout of resistance exercise.

Publication Title

Resistance exercise training influences skeletal muscle immune activation: a microarray analysis.

Sample Metadata Fields

Sex, Specimen part, Disease, Disease stage, Subject

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accession-icon GSE43482
Cytosolic DNA stimulated gene regulation
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 32 Downloadable Samples
  • Technology Badge IconIllumina HumanHT-12 V4.0 expression beadchip, Illumina MouseWG-6 v2.0 expression beadchip

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

STING recognition of cytoplasmic DNA instigates cellular defense.

Sample Metadata Fields

Specimen part, Cell line

View Samples
accession-icon GSE43481
Gene expression profiling of dsDNA90 or ssDNA90 stimulated Mouse Embryonic Fibroblasts
  • organism-icon Mus musculus
  • sample-icon 20 Downloadable Samples
  • Technology Badge IconIllumina MouseWG-6 v2.0 expression beadchip

Description

Gene expression analysis of wild type, STING knock-out and STAT1 knock-out Mouse Embryonic Fibroblasts (MEFs) stimulated with 90-mer dsDNA or 90-mer ssDNA. Genes whose expression that are affected by cytosolic DNA in a STING dependent manner will be identified and signaling pathways regulated by STING will be elucidated.

Publication Title

STING recognition of cytoplasmic DNA instigates cellular defense.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE43480
Gene expression profiling of human telomerase fibroblasts stimulated with dsDNA90
  • organism-icon Homo sapiens
  • sample-icon 8 Downloadable Samples
  • Technology Badge IconIllumina HumanHT-12 V4.0 expression beadchip

Description

Gene expression analysis of dsDNA90 stimulated human telomerase fibroblasts (hTERT-BJ1) after STING siRNA treatment. Genes whose expression that are affected by cytosolic DNA in a STING dependent manner will be identified and signaling pathways regulated by STING will be elucidated.

Publication Title

STING recognition of cytoplasmic DNA instigates cellular defense.

Sample Metadata Fields

Specimen part, Cell line

View Samples
accession-icon GSE43479
Gene expression profiling of 34.5 deleted HSV1 infected Mouse Embryonic Fibroblasts
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
  • Technology Badge IconIllumina MouseWG-6 v2.0 expression beadchip

Description

Gene expression analysis of wild type and STING knock-out Mouse Embryonic Fibroblasts (MEFs) infected with 34.5 deleted HSV1. Genes whose expression that are affected by HSV1 in a STING dependent manner will be identified and signaling pathways regulated by STING will be elucidated.

Publication Title

STING recognition of cytoplasmic DNA instigates cellular defense.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE24235
Skeletal muscle gene expression in response to resistance exercise: sex specific regulation
  • organism-icon Homo sapiens
  • sample-icon 25 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

The molecular mechanisms underlying the sex differences in human muscle morphology and function remain to be elucidated. The purpose of the study was to detect the sex differences in the skeletal muscle transcriptome in both the resting state and following anabolic stimuli, resistance exericse.

Publication Title

Skeletal muscle gene expression in response to resistance exercise: sex specific regulation.

Sample Metadata Fields

Sex

View Samples
accession-icon GSE10849
Caveolin-1 Knockout Hearts
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

Hearts Lacking Caveolin-1 Develop Hypertrophy with Normal Cardiac Substrate Metabolism

Publication Title

Hearts lacking caveolin-1 develop hypertrophy with normal cardiac substrate metabolism.

Sample Metadata Fields

No sample metadata fields

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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