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accession-icon GSE15103
PAX3-FKHR regulated genes differentially expressed between alveolar and embryonal rhabdomyosarcoma
  • organism-icon Homo sapiens
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133A Array (hgu133a)

Description

The overall goal and objective is to study the degree to which PAX3-FKHR accounts for differences between ARMS and ERMS by expressing a construct (termed P3FK/ER) consisting of PAX3-FKHR joined to the estrogen receptor ligand binding domain in an ERMS cell culture system.

Publication Title

Identification of PAX3-FKHR-regulated genes differentially expressed between alveolar and embryonal rhabdomyosarcoma: focus on MYCN as a biologically relevant target.

Sample Metadata Fields

Cell line

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accession-icon SRP057793
RNA-seq performed on sarcomas to identify various alterations
  • organism-icon Homo sapiens
  • sample-icon 149 Downloadable Samples
  • Technology Badge IconIlluminaHiSeq2000

Description

No description.

Publication Title

Genomic and transcriptomic comparison of post-radiation versus sporadic sarcomas.

Sample Metadata Fields

No sample metadata fields

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accession-icon SRP113755
Transcriptome characterization of radiation-induced sarcomas
  • organism-icon Homo sapiens
  • sample-icon 73 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

No description.

Publication Title

Genomic and transcriptomic comparison of post-radiation versus sporadic sarcomas.

Sample Metadata Fields

Sex, Age, Specimen part, Disease, Disease stage

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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