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accession-icon GSE50131
The transcription program of Runx3 in natural killer cells and CD8+ T cells
  • organism-icon Mus musculus
  • sample-icon 28 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Runx3-mediated transcriptional program in cytotoxic lymphocytes.

Sample Metadata Fields

Sex, Age, Specimen part, Treatment

View Samples
accession-icon GSE50122
Runx3 function in splenic NK cells (IL-2 or IL-15)
  • organism-icon Mus musculus
  • sample-icon 10 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

NK cells are innate immune cells that recognize and kill foreign, virally-infected and tumor cells without the need for prior immunization. NK expansion following viral infection is IL-2 or IL-15-dependent.

Publication Title

Runx3-mediated transcriptional program in cytotoxic lymphocytes.

Sample Metadata Fields

Sex, Age, Specimen part, Treatment

View Samples
accession-icon GSE50123
Runx3 function in splenic NK cells
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

NK cells are innate immune cells that recognize and kill foreign, virally-infected and tumor cells without the need for prior immunization. NK expansion following viral infection is IL-2 or IL-15-dependent.

Publication Title

Runx3-mediated transcriptional program in cytotoxic lymphocytes.

Sample Metadata Fields

Sex, Age, Specimen part

View Samples
accession-icon GSE50119
Runx3 function in CD8+ splenic T cells
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

CD8+T cells are immune cells that recognize foreign antigens on infected and tumor cells, leading to cytokine-dependent expansion and activation of cytotoxicity towards the targets.

Publication Title

Runx3-mediated transcriptional program in cytotoxic lymphocytes.

Sample Metadata Fields

Sex, Age, Specimen part

View Samples
accession-icon GSE50121
Runx3 function in IL-2-activated splenic CD8+ T cells.
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

CD8+T cells are immune cells that recognize foreign antigens on infected and tumor cells, leading to cytokine-dependent expansion and activation of cytotoxicity towards the targets.

Publication Title

Runx3-mediated transcriptional program in cytotoxic lymphocytes.

Sample Metadata Fields

Sex, Age, Specimen part

View Samples
accession-icon GSE52625
Runx3 Regulates Interleukin-15-Dependent Natural Killer Cell Activation
  • organism-icon Mus musculus
  • sample-icon 18 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Transcription factor Runx3 regulates interleukin-15-dependent natural killer cell activation.

Sample Metadata Fields

Sex, Age, Specimen part

View Samples
accession-icon GSE50120
Runx3 function in splenic NK cells activated in vivo by IL-15.
  • organism-icon Mus musculus
  • sample-icon 18 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

NK cells are innate immune cells that recognize and kill foreign, virally-infected and tumor cells without the need for prior immunization. NK expansion following viral infection is IL-2 or IL-15-dependent.

Publication Title

Transcription factor Runx3 regulates interleukin-15-dependent natural killer cell activation.

Sample Metadata Fields

Sex, Age, Specimen part

View Samples
accession-icon GSE45374
Cell-autonomous function of Runx1 transcriptionally regulates megakaryocytic maturation in mice
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Cell-autonomous function of Runx1 transcriptionally regulates mouse megakaryocytic maturation.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE45373
Cell-autonomous function of Runx1 transcriptionally regulates megakaryocytic maturation in mice (expression)
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

RUNX1 transcription factor (TF) is a key regulator of megakaryocytic development and when mutated is associated with familial platelet disorder and predisposition to acute myeloid leukemia (FPD-AML). We used mice lacking Runx1 specifically in megakaryocytes (MKs) to characterize the Runx1-mediated transcriptional program during advanced stages of MK differentiation. Gene expression and chromatin-immunoprecipitation-sequencing (ChIP-seq) of Runx1 andp300identified functional Runx1-bound MK enhancers. Runx1/p300 co-bound regions showed significant enrichment in genes important for MK and platelet homeostasis. Runx1-bound regions were highly enriched in RUNX and ETS motifs and to a lesser extent in GATA motif.The data providesthe first example of genome-wide Runx1/p300 occupancy in maturating FL-MK,unravels the Runx1-regulated program controlling MK maturationin vivoandidentifies itsbona fideregulated genes. It advances our understandingof the molecular events that upon mutations in RUNX1 lead to thepredisposition to familial platelet disorders and FPD-AML.

Publication Title

Cell-autonomous function of Runx1 transcriptionally regulates mouse megakaryocytic maturation.

Sample Metadata Fields

Specimen part

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accession-icon GSE45748
Addiction of t(8;21) and inv(16) AML to native RUNX1
  • organism-icon Homo sapiens
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Addiction of t(8;21) and inv(16) acute myeloid leukemia to native RUNX1.

Sample Metadata Fields

Cell line

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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