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accession-icon SRP081185
Homo sapiens Transcriptome or Gene expression
  • organism-icon Homo sapiens
  • sample-icon 2 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 4000

Description

human

Publication Title

No associated publication

Sample Metadata Fields

Sex, Age, Specimen part

View Samples
accession-icon E-MEXP-1451
Transcription profiling of Arabidopsis replum cells at two development time points using cells obtained from laser capture microdissection of tape-transferred paraffin sections to promote recovery of structurally intact RNA
  • organism-icon Arabidopsis thaliana
  • sample-icon 7 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

RNA prepared from specialized replum cells within siliques provided targets for profiling the Arabidopsis genome during replum cell development.

Publication Title

Laser capture microdissection of plant cells from tape-transferred paraffin sections promotes recovery of structurally intact RNA for global gene profiling.

Sample Metadata Fields

Specimen part

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accession-icon SRP108540
Glycine max Raw sequence reads
  • organism-icon Glycine max
  • sample-icon 35 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

Transcriptome sequencing to identify differentially expressed transcripts in roots of iron deficiency chlorosis tolerant line U06-105454 and iron deficiency chlorosis sensitive line U06-625083 with low iron and alkaline treatments

Publication Title

No associated publication

Sample Metadata Fields

Age, Specimen part, Treatment

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accession-icon SRP136224
zebrafish RNA-seq
  • organism-icon Danio rerio
  • sample-icon 12 Downloadable Samples
  • Technology Badge IconIlluminaHiSeq2500

Description

To reveal the toxic mechanism of thifluzamide in zebrafish

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon SRP170079
Effect of post-silking drought stress on the expression profiles of genes involved in carbon and nitrogen metabolism during leaf senescence in maize (Zea mays L.)
  • organism-icon Zea mays
  • sample-icon 6 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

transcriptional regulation of specific carbon and nitrogen metabolism genes in maize plants exposed to post-silking (PD) drought stress.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Treatment

View Samples
accession-icon SRP095148
transcriptomic analysis of lung tissue in OVA-challenged mice
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

No description.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part, Cell line, Treatment

View Samples
accession-icon SRP115073
zebrafish Raw sequence reads
  • organism-icon Danio rerio
  • sample-icon 1 Downloadable Sample
  • Technology Badge IconIllumina HiSeq 2500

Description

The study was to unravel the complex toxic effects of chemical contaminants on the health of organisms as based on different levels of biological profling.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part, Cell line

View Samples
accession-icon SRP142335
Arabidopsis thaliana Transcriptome
  • organism-icon Arabidopsis thaliana
  • sample-icon 1 Downloadable Sample
  • Technology Badge IconIllumina HiSeq 2000

Description

for studying heat resistant genes

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE45987
A transcriptomic analysis of a Caucasian family cohort of high risks for the metabolic syndrome
  • organism-icon Homo sapiens
  • sample-icon 298 Downloadable Samples
  • Technology Badge IconIllumina HumanWG-6 v3.0 expression beadchip

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

A comprehensive analysis of adiponectin QTLs using SNP association, SNP cis-effects on peripheral blood gene expression and gene expression correlation identified novel metabolic syndrome (MetS) genes with potential role in carcinogenesis and systemic inflammation.

Sample Metadata Fields

Sex, Age, Race

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accession-icon GSE55857
Comprehensive Analysis of Recurrence-Associated Small Non-Coding RNAs in Esophageal Cancer
  • organism-icon Homo sapiens
  • sample-icon 255 Downloadable Samples
  • Technology Badge IconIllumina HumanHT-12 V4.0 expression beadchip

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Integrated genomic analysis of recurrence-associated small non-coding RNAs in oesophageal cancer.

Sample Metadata Fields

Specimen part, Cell line, Treatment, Time

View Samples
...

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

Powered by Alex's Lemonade Stand Foundation

Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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