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SRP133806
Glycine max
4 Downloadable Samples
Illumina HiSeq 4000
Description
the leaves of the downy mildew pre-inoculation and after 72 h of inoculation were sequenced for the high resistance varieties of soybean downy mildew - Jilin Xiaoji 1 and the high susceptible cultivar - Kefeng 1.The following results were obtained by transcriptome data analysis
Publication Title
No associated publication
Sample Metadata Fields
Specimen part
View Samples- Glycine max
- 2 Downloadable Samples
- Illumina HiSeq 2000
Description
No description.
Publication Title
No associated publication
Sample Metadata Fields
Specimen part
View Samples- Saccharomyces cerevisiae
- 36 Downloadable Samples
Affymetrix Yeast Genome 2.0 Array (yeast2)
Description
Gene regulatory significance of the JmjC domain H235A point mutation in the yeast transcription factor Rph1, in log and post-diauxic shift (pds) phase
Publication Title
The histone demethylase activity of Rph1 affects telomeric silencing but is not required for nutrient signaling
Sample Metadata Fields
No sample metadata fields
View Samples- Homo sapiens
- 9 Downloadable Samples
- Illumina HiSeq 4000
Description
RNA-seq was used to verify whether GPR31 is a high affinity receptor of 12-HETE. Normal human liver L02 cells, GPR31 knockout L02 cells and rescue of GPR31 knockout L02 cells under 12-HETE treatment simultaneously was used for RNA-seq.
Publication Title
No associated publication
Sample Metadata Fields
Sex, Specimen part, Cell line
View Samples- Mus musculus
- 6 Downloadable Samples
- Illumina HiSeq 4000
Description
Single-end RNA libraries were prepared from liver of Flox and IRF6-HKO mice with a high fat diet (HFD) for 10 weeks, and were sequenced using HiSeq 4000 in Beijing Genomics Institute. Three independent biological replicate samples were sequenced for each group.
Publication Title
No associated publication
Sample Metadata Fields
Sex, Age, Specimen part, Cell line
View Samples- Drosophila melanogaster
- 66 Downloadable Samples
- Illumina HiSeq 2000
Description
This study crossed Drosophila melanogaster genotypes from four populations to the reference genome line. RNAseq data was then generated to study natural variation in allele specific expression.
Publication Title
No associated publication
Sample Metadata Fields
Sex, Specimen part, Cell line
View Samples- Homo sapiens
- 36 Downloadable Samples
- Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)
Description
T-cell acute lymphoblastic leukemia (T-ALL) and lymphoma (T-LBL) share common morphologic and immunophenotypic features and are treated with similar therapeutic approaches. Nonetheless, they show distinct clinical presentations suggesting that they may represent two different biological entities. In order to investigate T-LBL and T-ALL biological characteristics we used transcriptional profiling approache. Genome-wide gene expression profiling, performed on 20 T-LBL and 10 T-ALL diagnostic specimens, showed that the two malignancies shared a large fraction of their transcriptional profile while a subset of genes appeared to be differentially expressed in T-LBL versus T-ALL. This gene signature included genes involved in chemotactic responses and angiogenesis which might play a role in the different tumor cell localization suggesting that T-LBL and T-ALL could be two distinct diseases with unique transcriptional characteristics.
Publication Title
No associated publication
Sample Metadata Fields
Specimen part, Disease
View Samples- Homo sapiens
- 32 Downloadable Samples
- Affymetrix Human Genome U133A Array (hgu133a)
Description
In order to identify genes dysregulated by the aberrant transcriptional activity of RUNX1-RUNX1T1, we used microarrays to determine the effect of this mutation on gene expression during myeloid and erythroid development of normal human progenitor cells.
Publication Title
Transcriptional dysregulation mediated by RUNX1-RUNX1T1 in normal human progenitor cells and in acute myeloid leukaemia.
Sample Metadata Fields
Specimen part
View Samples- Arabidopsis thaliana
- 20 Downloadable Samples
- Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)
Description
Seven-day-old white-light-grown Arabidopsis seedlings were exposed for 15 minutes to polychromatic radiation with decreasing short-wave cut-off in the UV range, transferred back to the standard growth chamber and samples were taken 1 and 6 hours after the start of irradiation.
Publication Title
Genome-wide analysis of gene expression reveals function of the bZIP transcription factor HY5 in the UV-B response of Arabidopsis.
Sample Metadata Fields
Age, Time
View Samples- Homo sapiens
- 20 Downloadable Samples
- Illumina HiSeq 4000, Illumina HiSeq 3000, NextSeq 500
Description
Gene expression profile in Calu-3 cells infected with MERS-CoV or SARS-CoV
Publication Title
No associated publication
Sample Metadata Fields
No sample metadata fields
View Samples