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accession-icon GSE96986
Single cell transcriptomics reveals new insights on the dynamical function of transcription factors during blood stem and progenitor cell formation
  • organism-icon Mus musculus, Other sequences, Homo sapiens
  • sample-icon 27 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000, Affymetrix Mouse Gene 2.0 ST Array (mogene20st)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Single-cell transcriptomics reveals a new dynamical function of transcription factors during embryonic hematopoiesis.

Sample Metadata Fields

Specimen part, Disease, Cell line, Treatment

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accession-icon GSE44278
Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of polycomb-target genes
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge IconIllumina MouseRef-8 v2.0 expression beadchip

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of Polycomb target genes.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE49588
Expression data from pancreatic stellate cells and cancer cell line MiaPaca2
  • organism-icon Homo sapiens
  • sample-icon 28 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE17096
mRNA composition of IRP1 mRNPs in mouse tissues
  • organism-icon Mus musculus
  • sample-icon 20 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

Affymetrix microarrays were used to determine the mRNA composition of mRNPs obtained by immunoprecipitation with IRP1 (iron regulatory protein 1).

Publication Title

Identification of target mRNAs of regulatory RNA-binding proteins using mRNP immunopurification and microarrays.

Sample Metadata Fields

Sex

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accession-icon GSE17097
mRNA composition of IRP2 mRNPs in mouse tissues
  • organism-icon Mus musculus
  • sample-icon 20 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

Affymetrix microarrays were used to determine the mRNA composition of mRNPs obtained by immunoprecipitation with IRP2 (iron regulatory protein 2).

Publication Title

No associated publication

Sample Metadata Fields

Sex

View Samples
accession-icon GSE96836
Microarray analysis of the Endo and eVSM populations for the A2lox.i8TFs cell line
  • organism-icon Mus musculus
  • sample-icon 18 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 2.0 ST Array (mogene20st)

Description

The aim of the experiment was to study the transcriptome changes occuring after overexpression of Erg, Fli1, Tal1, Lyl1, Lmo2, Runx1, Cbfb and Gata2 in endothelial (Endo) and enriched vascular smooth muscles (eVSM) populations.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Cell line, Treatment

View Samples
accession-icon GSE16853
Expression data from Foxl2 wild-type and mutant ovaries and testes
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

Foxl2 is a forkhead transcription factor expressed only in the female, but not in the male gonad. We have created mice homozygous mutant for the Foxl2 gene (KO) as well as mice carrying a conditional mutant Foxl2 allele (floxed).

Publication Title

Somatic sex reprogramming of adult ovaries to testes by FOXL2 ablation.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE49586
Expression data from pancreatic cancer cell line MiaPaca2
  • organism-icon Homo sapiens
  • sample-icon 10 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

tumor-stroma crosstalk drives pancreatic carcinogenesis

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE49583
Expression data from pancreatic stellate cells
  • organism-icon Homo sapiens
  • sample-icon 9 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

tumor-stroma crosstalk drives pancreatic carcinogenesis

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE49584
Expression data from pancreatic cancer cell line MiaPaca2 [control]
  • organism-icon Homo sapiens
  • sample-icon 9 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

tumor-stroma crosstalk drives pancreatic carcinogenesis

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

Powered by Alex's Lemonade Stand Foundation

Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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