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accession-icon E-MEXP-1451
Transcription profiling of Arabidopsis replum cells at two development time points using cells obtained from laser capture microdissection of tape-transferred paraffin sections to promote recovery of structurally intact RNA
  • organism-icon Arabidopsis thaliana
  • sample-icon 7 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

RNA prepared from specialized replum cells within siliques provided targets for profiling the Arabidopsis genome during replum cell development.

Publication Title

Laser capture microdissection of plant cells from tape-transferred paraffin sections promotes recovery of structurally intact RNA for global gene profiling.

Sample Metadata Fields

Specimen part

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accession-icon SRP108540
Glycine max Raw sequence reads
  • organism-icon Glycine max
  • sample-icon 35 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

Transcriptome sequencing to identify differentially expressed transcripts in roots of iron deficiency chlorosis tolerant line U06-105454 and iron deficiency chlorosis sensitive line U06-625083 with low iron and alkaline treatments

Publication Title

No associated publication

Sample Metadata Fields

Age, Specimen part, Treatment

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accession-icon SRP081185
Homo sapiens Transcriptome or Gene expression
  • organism-icon Homo sapiens
  • sample-icon 2 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 4000

Description

human

Publication Title

No associated publication

Sample Metadata Fields

Sex, Age, Specimen part

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

Powered by Alex's Lemonade Stand Foundation

Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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