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accession-icon GSE2175
Differential gene expression in pituitary adenomas by oligonucleotide array analysis
  • organism-icon Homo sapiens
  • sample-icon 5 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133A Array (hgu133a)

Description

This series includes the four major subtypes of pituitary adenomas and normal post-mortem pituitary tissue

Publication Title

Differential gene expression in pituitary adenomas by oligonucleotide array analysis.

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE13610
Basal gene expression in bone (mice and rat)
  • organism-icon Mus musculus, Rattus norvegicus
  • sample-icon 15 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Adult rat bones maintain distinct regionalized expression of markers associated with their development.

Sample Metadata Fields

Sex, Specimen part, Treatment

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accession-icon GSE12966
Basal gene expression in bone
  • organism-icon Rattus norvegicus
  • sample-icon 9 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

Analysis of basal gene expression of the protective bones of the skull (parietals) and weight-bearing bones of the limb (ulnae)

Publication Title

Adult rat bones maintain distinct regionalized expression of markers associated with their development.

Sample Metadata Fields

Sex, Specimen part, Treatment

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accession-icon GSE13563
Pilot study: Basal gene expression in bone
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

Pilot study

Publication Title

Adult rat bones maintain distinct regionalized expression of markers associated with their development.

Sample Metadata Fields

Sex, Specimen part

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accession-icon GSE94279
Expression data from environmentally enriched mice
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 2.0 ST Array (mogene20st)

Description

Environmental enrichment has been shown to induce wholescale alterations to the gene expression profile of experimental animals

Publication Title

The impact of environmental enrichment on the murine inflammatory immune response.

Sample Metadata Fields

Sex, Age

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accession-icon GSE42658
Expression profiles for paediatric brain tumours
  • organism-icon Homo sapiens
  • sample-icon 73 Downloadable Samples
  • Technology Badge IconIllumina HumanHT-12 V3.0 expression beadchip

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Comparative expression analysis reveals lineage relationships between human and murine gliomas and a dominance of glial signatures during tumor propagation in vitro.

Sample Metadata Fields

Sex, Age, Specimen part, Disease stage

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accession-icon GSE42656
Gene expression profiles for paediatric brain tumours
  • organism-icon Homo sapiens
  • sample-icon 73 Downloadable Samples
  • Technology Badge IconIllumina HumanHT-12 V3.0 expression beadchip

Description

In this study, we screened a cohort of 57 paediatric brain tumours, with a wide range of pathologies to identify gene expression profiles

Publication Title

Comparative expression analysis reveals lineage relationships between human and murine gliomas and a dominance of glial signatures during tumor propagation in vitro.

Sample Metadata Fields

Sex, Age, Specimen part, Disease stage

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accession-icon GSE42294
Identification of BORIS-bound transcripts in neural progenitor cells and young neurons
  • organism-icon Homo sapiens
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

This study compares the transcripts bound to BORIS in neural progenitor cells and cells differentiated for 6 days into young neurons

Publication Title

BORIS/CTCFL is an RNA-binding protein that associates with polysomes.

Sample Metadata Fields

Specimen part

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accession-icon GSE18680
Gene expression profile of human ovarian cancer cell lines in vitro
  • organism-icon Homo sapiens
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

We have previously described how TNF-, IL-6, CXCR4 and the CXCR4 ligand CXCL12 are expressed by human ovarian cancer cells in vitro. By comparing four ovarian cancer cell lines with varying levels of constitutive TNF- production we found that CXCR4, CXCL12, TNF- and IL-6 were linked in an autocrine network in malignant cells that had an effect on tumour growth and angiogenesis in one xenograft model of ovarian cancer.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Cell line

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accession-icon GSE13763
Gene expression profiling after RNA interference of CXCR4 in human ovarian cancer cell line IGROV-1.
  • organism-icon Homo sapiens
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

In the past three years the role of inflammatory cytokines and chemokines in tumour promotion and progression has been intensively studied. The chemokine receptor CXCR4 and its ligand CXCL12 are commonly expressed in malignant cells from primary tumours, metastases and also in malignant cell lines. To investigate the biological significance of this receptor/ligand pair, we knocked-down CXCR4 expression in ovarian cancer cell line IGROV-1 using shRNA, and established stable cell lines.

Publication Title

A dynamic inflammatory cytokine network in the human ovarian cancer microenvironment.

Sample Metadata Fields

No sample metadata fields

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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