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accession-icon SRP051449
Danio rerio Transcriptome or Gene expression
  • organism-icon Danio rerio
  • sample-icon 2 Downloadable Samples
  • Technology Badge IconIlluminaGenomeAnalyzerIIx

Description

To identify molecular signals that initiate liver regeneration after 1/3 PH

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon SRP089827
Danio rerio strain:AB strain Transcriptome or Gene expression
  • organism-icon Danio rerio
  • sample-icon 1 Downloadable Sample
  • Technology Badge IconIlluminaHiSeq2000

Description

Mercury is a widespread toxicant in aquatic environment that can cause deleterious effects on fish. Although a number of mercury-regulated genes have been investigated in adult fish, the transcriptional responses of fish embryos to acute mercury exposure are not well understood. In this study, RNA sequencing was used to examine the transcriptional changes in developing zebrafish under a low concentration of mercury exposure from 24 to120 hpf. Our results provide useful insights to help further understand the transcriptional response and detoxification ability of zebrafish embryos following acute exposure to mercury.

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon SRP065059
Zea mays cultivar:Shandan 609 Raw sequence reads
  • organism-icon Zea mays
  • sample-icon 4 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

This study provide a dynamic atlas of endosperm development from Shaanxi within China

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

View Samples
accession-icon SRP096352
Centre for Environmental Radioactivity (CERAD), Research Area 3 - Biological Responses: Transgenerational hereditary, reproductive and epigenetic effects.
  • organism-icon Danio rerio
  • sample-icon 15 Downloadable Samples
  • Technology Badge IconIlluminaHiSeq2000

Description

The main aim of this focus area is to generate new knowledge from detailed endpoint analyses after gamma radiation exposures, plus-minus secondary stressors, for a few selected model species. A special focus has been on effects related to reproduction and genotoxic effects, and underpinning mechanistic explanatory mechanisms involving transcriptomics and epigenetic regulation.

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon SRP111420
Bacterial co-culture
  • organism-icon Pseudomonas aeruginosa
  • sample-icon 4 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

Laboratorial research

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Cell line

View Samples
accession-icon SRP191741
Homo sapiens Transcriptome
  • organism-icon Homo sapiens
  • sample-icon 6 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 4000

Description

To identify genetic changes in Human Umbilical Vein Endothelial Cells induced by let-7d mimic or let-7d inhibitor transfection.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part, Cell line, Treatment

View Samples
accession-icon SRP173072
MMP7-induced genetic changes in Schwann cells
  • organism-icon Rattus norvegicus
  • sample-icon 6 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 4000

Description

To better understand the underlying molecular events, sequencing analysis was conducted by using RNAs isolated from Schwann cells treated with or without exogenous MMP7 recombinant protein.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part, Cell line, Treatment

View Samples
accession-icon SRP200823
Rattus norvegicus Transcriptome or Gene expression
  • organism-icon Rattus norvegicus
  • sample-icon 6 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 4000

Description

To study the global changes of genes in the dorsal root ganglion (DRG) after rat sciatic nerve injury.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Age, Specimen part, Treatment

View Samples
accession-icon SRP083126
Homo sapiens Transcriptome or Gene expression
  • organism-icon Homo sapiens
  • sample-icon 2 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

Gene expression of Human THP-1 cells infected by cytomegalovirus

Publication Title

No associated publication

Sample Metadata Fields

Sex, Age, Specimen part

View Samples
accession-icon SRP169067
maize nucellus sequencing
  • organism-icon Zea mays
  • sample-icon 56 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 1500

Description

Transcriptome dynamics of nucellus in early maize seed

Publication Title

High Temporal-Resolution Transcriptome Landscape of Early Maize Seed Development.

Sample Metadata Fields

Age, Specimen part

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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