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accession-icon GSE36091
Gene Expression profiles of colon from VhlF/F, VhlIE, VhlF/F/Apcmin/+, VhlIE/Apcmin/+
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

To identify the precise molecular mechanisms that could contribute to the increase in colon carcinogenesis, microarray gene expression analysis was performed on colon RNA isolated from 5-week-old VhlF/F and VhlIE, VhlIE/Apcmin/+ and VhlF/F/Apcmin/+ mice.

Publication Title

Hypoxia-inducible factor-2α activation promotes colorectal cancer progression by dysregulating iron homeostasis.

Sample Metadata Fields

Age, Specimen part

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accession-icon GSE65104
Gene Expression profiles of normal and tumor colon tissues from CDX2; Dmt1+/+/ApcF/+, CDX2; Dmt1F/F/ApcF/+
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 2.1 ST Array (mogene21st)

Description

To investigate the detailed molecular mechanisms for the regulatory role of Dmt1 in colon tumorigenesis, microarray gene expression analysis was performed on normal and tumor colon tissue RNA isolated from 3-month-old CDX2; Dmt1+/+/ApcF/+and CDX2; Dmt1F/F/ApcF/+ mice.

Publication Title

Iron Uptake via DMT1 Integrates Cell Cycle with JAK-STAT3 Signaling to Promote Colorectal Tumorigenesis.

Sample Metadata Fields

Age

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accession-icon GSE86194
Gene Expression profiles of normal and inflamed colon tissues from Nik+/+, NikIE
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 2.1 ST Array (mogene21st)

Description

To investigate the detailed molecular mechanisms for the regulatory role of Nik in colitis, microarray gene expression analysis was performed on colon tissue RNA isolated from 3-month-old untreated control and DSS treated Nik+/+ and NikIE mice.

Publication Title

Intestinal non-canonical NFκB signaling shapes the local and systemic immune response.

Sample Metadata Fields

Age

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accession-icon GSE43416
Gene Expression profiles of colon from Hif-2F/F, Hif-2lIE treated with DSS
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

To investigate the detailed molecular mechanisms for the regulatory role of HIF-2 in experimental colitis, microarray gene expression analysis was performed on colon RNA isolated from 6- to 8-week-old Hif-2F/F, Hif-2lIE mice treated with 3%DSS for 3 days.

Publication Title

Endothelial PAS domain protein 1 activates the inflammatory response in the intestinal epithelium to promote colitis in mice.

Sample Metadata Fields

Age, Specimen part

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accession-icon GSE55915
Gene Expression profiles of colon from Hif-1+/+, Hif-1LSL/LSL
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.1 ST Array (mogene11st)

Description

To investigate the detailed molecular mechanisms for the regulatory role of HIF-1 in colon, microarray gene expression analysis was performed on colon RNA isolated from 6- to 8-week-old Hif-1+/+, Hif-1LSL/LSL mice.

Publication Title

Activation of HIF-1α does not increase intestinal tumorigenesis.

Sample Metadata Fields

Age, Specimen part

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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