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accession-icon E-MEXP-2715
Transcription profiling of mouse dendritic cell line D1 treated with various compounds and infectious agents
  • organism-icon Mus musculus
  • sample-icon 104 Downloadable Samples
  • Technology Badge Icon Affymetrix Murine Genome U74A Version 2 Array (mgu74av2)

Description

Effect of LPS, CpG, dexamethasone, Pam3Cys, poly I:C, zymosan, Schistosoma mansoni eggs, Schistosoma mansoni shistosomula, Listeria monocytogenes, Leishmania mexicana amastigotes and Leishmania mexicana promastigotes on dendritic cell gene transcription

Publication Title

Gene expression profiles identify inflammatory signatures in dendritic cells.

Sample Metadata Fields

Sex, Specimen part, Cell line, Treatment, Compound, Time

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accession-icon E-MEXP-3521
Transcription profiling by array of human dendritic cells and macrophages infected with Mycobacterium tuberculosis
  • organism-icon Homo sapiens
  • sample-icon 72 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133A Array (hgu133a)

Description

Human monocytes were purified from cytapheresis rings and differentiated into macrophages or DCs according to a previously described procedure

Publication Title

Probing host pathogen cross-talk by transcriptional profiling of both Mycobacterium tuberculosis and infected human dendritic cells and macrophages

Sample Metadata Fields

Specimen part, Time

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accession-icon GSE15759
NFAT-mediated gene expression response to LPS in murine dendritic cells and macrophages
  • organism-icon Mus musculus
  • sample-icon 36 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430A 2.0 Array (mouse430a2)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

CD14 regulates the dendritic cell life cycle after LPS exposure through NFAT activation.

Sample Metadata Fields

Specimen part

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accession-icon GSE29962
Nutrient-dependent growth of NIH3T3 and NIH3T3 K-ras cell lines.
  • organism-icon Mus musculus
  • sample-icon 28 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

Expression profiling of normal NIH3T3 and transformed NIH3T3 K-ras cell lines grown for 72 hours in optimal glucose availability (25 mM glucose) or low glucose availability (1 mM). Low glucose induces apoptosis in transformed cells as compared to normal ones.

Publication Title

Oncogenic K-Ras decouples glucose and glutamine metabolism to support cancer cell growth.

Sample Metadata Fields

Cell line, Time

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accession-icon GSE15718
Gene expression in dendritic cells stimulated with LPS in conditions allowing or inhibiting NFAT activation
  • organism-icon Mus musculus
  • sample-icon 18 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430A 2.0 Array (mouse430a2)

Description

Interleukin-2 (IL-2) is one of the molecules produced by mouse dendritic cells (DCs) after stimulation by Toll like receptor (TLR) agonists. By analogy with the events following T-cell receptor (TCR) engagement leading to IL-2 production we have observed that DC stimulation with lipopolysaccharide (LPS) induces Src-family kinase and phospholipase C (PLC)2 activation, influx of extracellular Ca2+ and calcineurin-dependent nuclear NFAT translocation. We have also observed that the initiation of this pathway is independent of TLR4 engagement, and dependent exclusively on CD14. To determine the role of NFAT in LPS activated dendritic cells we have performed microarray analysis in conditions allowing or inhibiting NFAT activation. We show here that LPS-induced NFAT activation via CD14 is necessary to cause death of terminally differentiated DCs, an event that is essential for maintaining self-tolerance and preventing autoimmunity. Consequently, blocking this pathway in vivo causes prolonged DC survival and an increase in T cell priming capability.

Publication Title

CD14 regulates the dendritic cell life cycle after LPS exposure through NFAT activation.

Sample Metadata Fields

Specimen part

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accession-icon E-MEXP-3489
Transcription profiling by array of mouse dendritic cells after treatment with ethanol or Carvacrol at different temperatures
  • organism-icon Mus musculus
  • sample-icon 18 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430A 2.0 Array (mouse430a2)

Description

Tolerogenic dendritic cells (DCs) induce regulatory T-cells and dampen pathogenic T-cell responses. Hereby, they have gained interest as a therapeutic target in the combat against autoimmune diseases. In this study we investigated whether tolerogenic DCs are induced by the phytonutrient carvacrol, a molecule with known anti-inflammatory properties. In this study, bone marrow derived DCs were treated with carvacrol in combination with thermal stress. Gene expression profiles were obtained by microarray analysis to test for an induced tolerogenic phenotype. To investigate the tolerogenic properties of treated DCs in vivo, T-cell anergy or the induction of a regulatory T-cell phenotype was studied in antigen specific T-cells. Finally, treated DCs were tested by transfer into an experimental arthritis model.

Publication Title

Tolerogenic dendritic cells that inhibit autoimmune arthritis can be induced by a combination of carvacrol and thermal stress.

Sample Metadata Fields

Sex, Age, Specimen part, Compound

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accession-icon GSE68266
Expression data of mouse NIH3T3 and NIH3T3-k-ras transformed cell lines after Forskolin treatment
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

Forskolin treatment induces activation of protein kinase A. This activation protects transformed cells from death induced by glucose starvation.

Publication Title

No associated publication

Sample Metadata Fields

Cell line

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accession-icon E-MEXP-3159
Transcription profile of dendritic cell line D1 treated with Listeria Monocytogenes
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Expression 430A Array (moe430a)

Description

Effect of Listeria Monocytogenes (MOI 1:20) on D1 dendritic cell on different time points: 0h, 2h, 4h, 8h, 12h, 24h

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part, Cell line, Time

View Samples
accession-icon E-MEXP-3158
Transcription profile of dendritic cell line D1 treated with Listeria Innocua
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Expression 430A Array (moe430a)

Description

Effect of Listeria Innocua (MOI 1:1000) on D1 dendritic cell at different time points: 0h, 2h, 4h, 8h, 12h, 24h

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part, Cell line, Time

View Samples
accession-icon E-MEXP-3157
Transcription profile of dendritic cell line D1 treated with Lactobacillus Paracasei
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430A 2.0 Array (mouse430a2)

Description

Mouse D1 dendritic cells treated with Lactobacillus Paracasei at different time points: 0h, 2h, 4h, 8h, 12h, 24h

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part, Cell line, Time

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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