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accession-icon GSE27429
Expression data at 24 hours after the blocking of Shh signaling in tooth germs at embryonic day 14
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

The genetic mechanism governing the spatial patterning of teeth still remains to be elucidated. Sonic hedgehog (Shh) is one of key signaling molecules involved in the spatial patterning of teeth. By utilizing maternal transfer of 5E1 (an IgG1 monoclonal antibody against Shh protein) through the placenta to block Shh signaling, we investigated the changes in tooth patterning and in gene expression.

Publication Title

Interactions between Shh, Sostdc1 and Wnt signaling and a new feedback loop for spatial patterning of the teeth.

Sample Metadata Fields

Specimen part, Time

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accession-icon GSE51342
Comparative gene expression analysis of dental follicle and periodontal ligament in humans
  • organism-icon Homo sapiens
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

The aim of this study was to evaluate and compare the gene expression profiles of dental follicle and periodontal ligament in humans, which can possibly explain their functions of dental follicle and PDL such as eruption coordination and stress resorption. That may apply this information to clinical problem like eruption disturbance and to periodontal tissue engineering.

Publication Title

Comparative gene-expression analysis of the dental follicle and periodontal ligament in humans.

Sample Metadata Fields

Specimen part

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accession-icon GSE51449
Comparative gene expression analysis of the human dental pulp in deciduous and permanent teeth
  • organism-icon Homo sapiens
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

Human deciduous and permanent teeth exhibit different developmental processes, morphologies, histological characteristics and life cycles. In addition their pulp tissues react differently to external stimuli, such as the pulp sensitivity test, dental trauma and pulp therapy materials. These differences are attributable to their genetic backgrounds. Therefore the purpose of this study is to compare the differences of dental pulp in deciduous and permanent teeth.

Publication Title

Distinctive genetic activity pattern of the human dental pulp between deciduous and permanent teeth.

Sample Metadata Fields

Specimen part

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accession-icon GSE71048
Gene expression analysis of coronal pulp and apical pulp complexes
  • organism-icon Homo sapiens
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

We performed this study to compare the gene expression pattern between coronal pulp and apical pulp complex

Publication Title

Comparative Gene Expression Analysis of the Coronal Pulp and Apical Pulp Complex in Human Immature Teeth.

Sample Metadata Fields

Specimen part

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accession-icon GSE50640
Comparative gene expression analysis of the human periodontal ligament in deciduous and permanent teeth
  • organism-icon Homo sapiens
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

There are histological and functional differences between human deciduous and permanent pediodontal ligament (PDL) tissues. The purpose of this study was to determine the differences between these two types of tissue at the molecular level by comparative gene expression analysis.

Publication Title

Comparative gene expression analysis of the human periodontal ligament in deciduous and permanent teeth.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE50639
Comparative gene expression analysis of the human periodontal ligament and dental pulp in the human permanent teeth
  • organism-icon Homo sapiens
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

The periodontal ligament(PDL) and dental pulp tissues of human permanent teeth have a number of differences in their developmental processes, histological characteristics and functions. It can be figured out that these differences are attributable to genetic backgrounds of their cells organized tissues. The purpose of this study was to identify the gene-expression profiles and their molecular biological differences of periodontal ligament and dental pulp tissues from the human permanent teeth.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

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accession-icon GSE58482
Gene expression analysis of normal and abnormal gingiva
  • organism-icon Homo sapiens
  • sample-icon 4 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Disease

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accession-icon GSE75642
Gene expression analysis of umbilical cord
  • organism-icon Homo sapiens
  • sample-icon 3 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

There were no studies about gene expression of umbilical cord tissue before. We performed this study to identify the gene expression of umbilical cord tissue.

Publication Title

Genetic Comparison of Stemness of Human Umbilical Cord and Dental Pulp.

Sample Metadata Fields

Specimen part

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accession-icon GSE75644
Gene expression analysis of human permanent dental pulp
  • organism-icon Homo sapiens
  • sample-icon 3 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

Gene expression analysis data of human permanent dental pulp tissues

Publication Title

Genetic Comparison of Stemness of Human Umbilical Cord and Dental Pulp.

Sample Metadata Fields

Specimen part

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accession-icon GSE58480
Gene expression analysis of normal gingiva
  • organism-icon Homo sapiens
  • sample-icon 3 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

There were no studies about gene expression of normal gingiva before. We performed this study to compare with gene expression of gingival fibromatosis

Publication Title

Comparison of Stemness and Gene Expression between Gingiva and Dental Follicles in Children.

Sample Metadata Fields

Specimen part, Disease

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...

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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